rs49251389 SNP Detail

Summary

• ID
  rs49251389
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21877496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACACACACA CACACACACA CACACACACA CATGTCATCC
  CATCTGTGTT CCTCTATAAG GCCCAATTAC AGACAGGATT GATTCAATGT CAATAGTTTA
  S
  CATGATTTTC AGGTATAGCA TTTTAAAGCA AGTGTACTCA TCACGAACTA TCCTTCTGAG
  ACATGCACAC TGTCATTCTG AGAGACATAA AGTGTCCATA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60549936	NES16568133	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49251389					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60549936	NES16568133	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21877496 () rs orientation: forward

Symbol	Name	Function Class
D17Jcs131	DNA segment, Chr 17, John C. Schimenti 131	49 bp distal
Gm53991	predicted gene, 53991	1605 bp downstream
Zfp983	zinc finger protein 983	within coordinates