rs49251397 SNP Detail

Summary

• ID
  rs49251397
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:28722867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAAGGA AACAAGGAGC
  CAGAGGTGTA AGCACCCAGG AAAAGTGCAT ATGTTTAACC GATGCAAGAC CCTTAGCGCA
  AACCCCAGCA CCAAAACATA AACGAAAATA AAGTGACCAG TTTCTTAAAA GCATTTTTTC
  TTGTATCTCA GAGCTCACAT ACATACCAGA AATGATGACA TAAATATCAT GTACACATTC
  W
  CTGGCTTGCT CTCACCCTGC CATTTTATAT TTCCTCCACA TATCAAAATA AATAAATAAA
  TAGGCATCTA TAGGTATAAT TATTCTGTTC CCCTCTCCTG TCTTCACAGA GGTGGCTGCC
  ATCCTGAAAG GTACAGTCTC CAGTGCATTT TTGTACATCT CCTCTGTGTG TATTCACAGA
  CACTGCCGTT TAATTAGGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60201947	NES15703396	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A		T	A	A	T		A
ss325126494	CHEV_16_28904201	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49251397					SNP	A	A	A	A	A	A	T	A	A	A	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60201947	NES15703396	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:28722867 () rs orientation: forward

Symbol	Name	Function Class
Mb21d2	Mab-21 domain containing 2	within coordinates
Rr513964	regulatory region 513964	1145 bp proximal
Tssr140667	transcription start site region 140667	1500 bp upstream