rs49253358 SNP Detail

Summary

• ID
  rs49253358
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:154278109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG CCAAGCTCTT GAACTTCACC
  R
  GCGCCTCCTA AGCCGCTCTA GGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136116997	ENSMUSSNP2588225	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49253358					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154278109 () rs orientation: forward

Symbol	Name	Function Class
Rr587866	regulatory region 587866	1985 bp distal
Rr587867	regulatory region 587867	957 bp distal
Rr587868	regulatory region 587868	within coordinates
Rr587869	regulatory region 587869	35 bp proximal
Rr587870	regulatory region 587870	203 bp proximal