rs49254438 SNP Detail

Summary

• ID
  rs49254438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108146350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGGG ACAGGGTCGG GTCCTCTGGG
  R
  TGCGCCGCTA ATGCCTGGAA CTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61704041	NES17652875	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	A	G	G	G	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49254438					SNP	G	G	A	G	G	A	G	G	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61704041	NES17652875	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108146350 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	within coordinates
Cpgi5076	CpG island 5076	within coordinates
Rr403488	regulatory region 403488	461 bp downstream
Setd3	SET domain containing 3	777 bp upstream
Tssr114948	transcription start site region 114948	1594 bp downstream
Tssr114949	transcription start site region 114949	1231 bp downstream
Tssr114950	transcription start site region 114950	957 bp downstream
Tssr114951	transcription start site region 114951	922 bp downstream
Tssr114952	transcription start site region 114952	509 bp downstream
Tssr114953	transcription start site region 114953	260 bp downstream
Tssr114954	transcription start site region 114954	168 bp downstream
Tssr117676	transcription start site region 117676	866 bp upstream
Tssr117677	transcription start site region 117677	752 bp upstream