rs49254526 SNP Detail

Summary

• ID
  rs49254526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137446594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGAA CCCCACGGGA TAGGAGCTGA
  Y
  TTAGGGGTCT CTGACCCCAC ATACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147617697	ENSMUSSNP3387758	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321366753	CHEV_4_137275198	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49254526					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137446594 () rs orientation: forward

Symbol	Name	Function Class
Gm52682	predicted gene, 52682	677 bp downstream
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	207 bp proximal
Rr100343	regulatory region 100343	6 bp proximal
Tssr39776	transcription start site region 39776	1928 bp downstream
Tssr39777	transcription start site region 39777	1902 bp downstream
Tssr39778	transcription start site region 39778	60 bp downstream
Tssr39779	transcription start site region 39779	30 bp downstream
Tssr39780	transcription start site region 39780	237 bp upstream
Tssr39781	transcription start site region 39781	402 bp upstream