rs49254633 SNP Detail

Summary

• ID
  rs49254633
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88531608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAAGGGTC TCTCAGTCAC
  ACCCAGTTGG CCAGCCCAGG ATCAGGGACA GCCTTTCGGA GGCCCCTGGG TGGAGTGGGT
  GGGGTACTGT CTGCGGGAAG CAGCACTCAG CAAATGAAAG CCAGGCCTGG AAACTGGCTG
  GTTGCTGTTC AGCTCCAGGG AGACCTGCTG CTGGCTAAGG TGCCCAGCTA GAACAGAAGG
  K
  GGTGTTCAAA ATGCTAGGGC AGGGCAGGGA CCTTACTGCC AGCACAGGGC TGGACAGCTA
  CGGCTAAACT ATAGGGTCAC TCCTTTCTGT GCTCTGAGTG CGTTTTGTGG TTGTGTGGTT
  GGCACATTAC GGCTTGGCGT AAAGCACTGT TTAGAAACTA AATAAATAAA AAATAAAAAA
  GTGGAAATAC TAAAGGTGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145451947	ENSMUSSNP5262816	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss322761679	CHEV_8_90328879	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49254633					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88531608 () rs orientation: forward

Symbol	Name	Function Class
Rr667021	regulatory region 667021	552 bp distal
Rr667022	regulatory region 667022	51 bp distal
Tssr82324	transcription start site region 82324	578 bp upstream
Tssr82325	transcription start site region 82325	517 bp upstream
Zfp423	zinc finger protein 423	within coordinates