rs49255836 SNP Detail

Summary

• ID
  rs49255836
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156822135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGT AGGTGAAAAT CACCACCCAT
  S
  GGGTCACCGG AGTTCCAGAC CTTTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145811254	ENSMUSSNP6361430	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49255836					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156822135 () rs orientation: forward

Symbol	Name	Function Class
Gm28694	predicted gene 28694	within coordinates
Gm70243	predicted gene, 70243	within coordinates
Rr372293	regulatory region 372293	within coordinates
Rr396432	regulatory region 396432	1978 bp upstream
Rr421300	regulatory region 421300	1542 bp distal
Rr421301	regulatory region 421301	275 bp distal
Rr421302	regulatory region 421302	925 bp proximal
Rr421303	regulatory region 421303	1588 bp proximal