rs49256816 SNP Detail

Summary

• ID
  rs49256816
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61265604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCAAGA TGTTGGGGTT
  TACTCAAGAT ACTAGGATGA CTCCTATATG CACTTTAGTT CTAGATCCTC TATCATCAAC
  CTTAAAATGA TAGAAGATGC ATTTGTAAAG TTCTCAGAAC AAGGCTTAGC AACTCACAGC
  TATTCATCTG TATTTTCCCT CTGAGGGAAA ACAGCTCAGA ATGAATAATT TCCATTAGTG
  W
  TTTGACTTCA GTGACTGCTA TTTCCTGAGA AACACATTGA CTTCTATTCC GAGCACGAAT
  TTTAGTGCAT AATGCACCTG AATATTTCAT TAGAAGTATG ATCATTCTAT TTCATAGACC
  ATAGTAGGAA CTCCAGACAC CTGATATCGG GAGGGTCCAA AGAATCAATG TAGGTGATGT
  AAGGTGAGAT GACTAACAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61823918	NES17749329	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49256816					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61823918	NES17749329	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61265604 () rs orientation: forward

Symbol	Name	Function Class
Rr388533	regulatory region 388533	1821 bp downstream