rs49257405 SNP Detail

Summary

• ID
  rs49257405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46505163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGAGCACC TTCCTACAGG
  GAGCACTTTA TCTGAATCAT GGACTTCCTG TCTAGAGCAC ACACTGAAAT CCAGTCTTCT
  AAATAAGCAT GGCGCAGTCT TGCCCTGGCC TTGCCTCTCA CCCCACTGGC CCTCTCAGGC
  CTAGAACCTT TTGACGGTGG TCTGCACAGG GCTCTCTAAG TCTGCTGCCT CCACTCTCCT
  R
  TCTTGATTTC TGTCCTCCTG GGTCTAGACA CAATCCCAGA CCTGTAAATA TCACTTCTCA
  GACACCAGCT ACATCTGTCC TTCACCTTTG GTTTATTGAA TAAATCCTTG CTGAAGGCCT
  TCCAAACCTG GCCCAATGGG ACACAGGCCC CTGGCATCTC TGTGAGGTCC TGCCAGTGTG
  CACGTGCTAT ATGCTAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss60312530	NES15816121	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs49257405					SNP	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312530	NES15816121	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46505163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	1057 bp distal
Rr363443	regulatory region 363443	1037 bp proximal
Rr370520	regulatory region 370520	1323 bp upstream
Trim8	tripartite motif-containing 8	269 bp downstream
Tssr156777	transcription start site region 156777	1384 bp downstream
Tssr156778	transcription start site region 156778	962 bp downstream
Tssr156779	transcription start site region 156779	868 bp downstream
Tssr156780	transcription start site region 156780	545 bp downstream
Tssr156781	transcription start site region 156781	521 bp downstream
Tssr156782	transcription start site region 156782	415 bp downstream