rs49257615 SNP Detail

Summary

• ID
  rs49257615
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46039605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCATGTT CTTTGTTAGT
  GGTTCAGTCT CTGTTAGCTT CCATGGGCTC AGGTTAGTTG ACTCTGTAGG TCTTCTTGTG
  GTGTCCTTGA CTGCTCCCGC ACACTCAATC CTATCCCGCA CTCTTCCACA GAACTCCCAA
  AGCTCTGCCT GATGTTTGGC TGTGGGTCTC TGCGTTTGTC TCAATGCACT GCTGGATGAA
  A
  CCTCTCAGGA GACAGTTATG CTAGGCTCCT GTCTGCAAGC ACAGCAGAGG ATCATTAATA
  GCGTCAGGGT TGGCTCTCTC CCATGGGATG GGTCTCATCT TGGACCAGTC ATTGGTTGGC
  TGTTCCCTCG GTCTCTGCTC CATCTTTATC CCTGCACATC TTGTAGGCAG ACAGATTTTG
  GGTGGAAGGT TTTGTGGGTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136423346	ENSMUSSNP5854782	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49257615					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46039605 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	1581 bp distal
Rr678057	regulatory region 678057	623 bp distal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	1070 bp downstream