rs49258819 SNP Detail

Summary

• ID
  rs49258819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112453628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTGCCAT GCAAATGAGT
  AGGGGAGCCT GCTTCAAAAC ATGGACGAGT TAGAAAGCAG TCACTCGCTG TACAAAACAA
  TGTTATTGTA AATAAGCCAT CCCCAGCTAC GAGCTTGCGT TGGACTGGCT AGCTGGGTAA
  AAATCATTAA TGGTTTCTCA GAAATACTGG GACAGAGAAA CCAAACCCAA ACTTTAGGAC
  Y
  CGTGGCAGCT AAAGTTCAAA GAACCAAAAG GCCAATGGTC TTAGTGTCCA CCCGAGAAGA
  AAAACACAAC TTTAAAACTG TTGAGATATC CTCTCTCTAA TAGAGGGGCT TGGCACAGCC
  TCCCCTGAGG TGTCCCACAA GACAGCTCGC TTCTTAACCA TCTCTGTGCA TTCCTGCAGT
  CACCTGACCA CAGTCTGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696796	NES15533135	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49258819					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696796	NES15533135	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112453628 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Rr486335	regulatory region 486335	within coordinates
Tssr121103	transcription start site region 121103	1295 bp upstream
Tssr121104	transcription start site region 121104	1322 bp upstream
Tssr121105	transcription start site region 121105	1353 bp upstream