rs49259036 SNP Detail

Summary

• ID
  rs49259036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80038604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTTTAT TCACCCCTTA
  CTTATTCAGA CCCTCTAAAC TGGCTGCTGT CATCACCTCA CAGGCTTGTC CATGAGAGGA
  AACTGAGGCA TGGAGACATT CAGGCGTCTG GCCAGTCATA GGCTGGTGAT GGACCCAGAC
  GTCCTCAATC TAGAACATGT GTCCTTTACC ACTGTCTAGC TTGGGTGGGG AACATCTCAG
  R
  AGTGTCTGTG TGGTGCCAGT CCAGCATTGT GTCACAGCCA GAGACTCCCT CAGCAGGTGC
  CAGGACTGGC TAAGTTAACA GTCCTTCCCT CCCAGTCTGA ACATCCAGTG CTTAAAAGCT
  TTGTCCCTAA TTTGCAGGGT TCAGTTTGCT TTATTGGGTA GGAGGTCTGT ACAGAGCACT
  TCAGAAAGGA TGCATACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63569774	NES17023026	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	G		A	A	G	A
ss148214188	ENSMUSSNP4049679	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A										G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49259036					SNP	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569774	NES17023026	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80038604 () rs orientation: forward

Symbol	Name	Function Class
Rr308002	regulatory region 308002	1004 bp distal
Rr310675	regulatory region 310675	1814 bp proximal
Rr314587	regulatory region 314587	204 bp distal
Tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1	within coordinates