rs49259320 SNP Detail

Summary

• ID
  rs49259320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80072383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCTTTTA ATTTTAGGTT
  TATTTTGTTT TGCTGCTTAG TATACTTCCA TCATTAGCCC TTAAAGGAAC AGAATAATAA
  TTATTTTAAT TTTTTTCCCC AAGAGGGCTG GAGCAACAGT TCAGTATTTA AGGGCTCTTG
  CTGCTCTTAC AGAGGACTCT GGTTCCCAGC CACCACATGG TGGCTCACAG CCATCTGTAA
  Y
  GGCATCTGAT GCCCTCTTCT GGGGTGTCTG AAGACAGCTA CAGTGTACTC ATATACAAAA
  AAAAAAAAAA AATAATAATA ATAATTCTTT ACTTTAAAAG AGAGAGAGAG AGCGAGAGAG
  ATTCTCCAAA CTGTAGAGGT TAGTCAAAGG GAAGGGGTAA AGGAAATAAT TCAAGCTGAG
  GAAAGAAAAT TCTCAAAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss132448933	ENSMUSSNP3213920	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs49259320					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80072383 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm113	DNA segment, Chr 11, Boehm 113	484 bp distal
Rr386348	regulatory region 386348	within coordinates
Rr452448	regulatory region 452448	1706 bp distal
Rr452449	regulatory region 452449	6 bp proximal
Rr452450	regulatory region 452450	1804 bp proximal
Rr452451	regulatory region 452451	1811 bp proximal
Rr452452	regulatory region 452452	1998 bp proximal