rs49261418 SNP Detail

Summary

• ID
  rs49261418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119417017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCAAGT TGGACACGTG
  ATTGGAAAAT CACAGCTTTG ATCTGTTGTG GTCTTCCTTT CTGAGGAGAG CAGGTAGGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTTGT CTCCCTAGAA AAAGTCTGTC ACCCAGCAGC
  TGCACAAACC ATGGGCTTCC AGCACGTGCC AATCTGATGG ACGCGACTCA GCATTTGAGT
  Y
  CCCCTTTTTC ATATGGGTCA AGCTGACGAC CTAGAATCTT AATGCGGATT CTCTTCCCAA
  TGCTTACCAA TAAGCAAACG AGAGAGAGAG AGGGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG ATTCTTTTCT TTCTTTTCTT CGAGTACAAG AAGCCAAGAA AAGCAAGGGA
  TTCCCAGTCA GAAGGTATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60832245	NES16024194	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49261418					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60832245	NES16024194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119417017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16447	CpG island 16447	221 bp proximal
Gm31190	predicted gene, 31190	1292 bp downstream