rs49261569 SNP Detail

Summary

• ID
  rs49261569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67145199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG TTCACGAACA TTCTGGAGAC
  R
  CTCTTTGCAC TCTATGAATA AGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss132326595	ENSMUSSNP4458115	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323719228	CHEV_11_67067875	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49261569					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67145199 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3528	transcription start site region 3528	360 bp upstream
Tssr3529	transcription start site region 3529	416 bp upstream
Tssr102201	transcription start site region 102201	855 bp downstream
Tssr102202	transcription start site region 102202	366 bp downstream
Tssr102203	transcription start site region 102203	303 bp downstream
Tssr102204	transcription start site region 102204	82 bp upstream
Tssr102205	transcription start site region 102205	300 bp upstream
Tssr102206	transcription start site region 102206	404 bp upstream
Tssr102207	transcription start site region 102207	1048 bp upstream
Tssr102208	transcription start site region 102208	1218 bp upstream
Tssr102209	transcription start site region 102209	1253 bp upstream
Tssr102210	transcription start site region 102210	1271 bp upstream
Tssr102211	transcription start site region 102211	1281 bp upstream
Tssr102212	transcription start site region 102212	1303 bp upstream
Tssr102213	transcription start site region 102213	1455 bp upstream
Tssr102214	transcription start site region 102214	1811 bp upstream
Tssr102215	transcription start site region 102215	1825 bp upstream
Tssr102216	transcription start site region 102216	1869 bp upstream
Tssr108534	transcription start site region 108534	1769 bp upstream
Tssr108535	transcription start site region 108535	1663 bp upstream
Tssr108536	transcription start site region 108536	319 bp upstream
Tssr108537	transcription start site region 108537	298 bp upstream
Tssr108538	transcription start site region 108538	185 bp downstream
Tssr108539	transcription start site region 108539	393 bp downstream
Tssr108540	transcription start site region 108540	453 bp downstream
Tssr108541	transcription start site region 108541	1062 bp downstream
Tssr108542	transcription start site region 108542	1223 bp downstream
Tssr108543	transcription start site region 108543	1338 bp downstream
Tssr108544	transcription start site region 108544	1921 bp downstream