rs49263700 SNP Detail

Summary

• ID
  rs49263700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45109957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTCCTTG AGGGAATGGA
  AGGGATGCCC AGAAGTATAG GGTTTTAGGT TCACCATAGG AACTAAGATT GTTTGCTTGT
  TTTTCTGTTT TCTGTAACCC AGGAGGTCGT GAAGCCCTTT GAGGGCTTGG AGTGGGCAGA
  GAGCCTTGGG TTACCGTGTG TGCACCTCCC TCGGGTGCTC TGGAAGGTGA CATGTGGAGG
  Y
  CCAGACAGGA CTTTGGAGTT CTGGTCAGCC TGTCTGTCTG GGTCTGTGTC AGTGAACCTG
  TCTTTCTAGA AACAGACACG CATGATGGCG CTTGGAGAAT TGCTGGGCTC CTTCCTGGAG
  TTTGGTCCAG AAGCCTCCTT GCAGGTTGCT CTTTTGGAAT CAAAAGGCCC GAGAGTTAGG
  GAGAGCAAGA ACTCAGGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ
ss61003433	NES16114214	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ
rs49263700					SNP	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003433	NES16114214	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45109957 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	1164 bp downstream
Cpgi19060	CpG island 19060	1103 bp distal
Cpgi19061	CpG island 19061	399 bp distal
Ftl1	ferritin light polypeptide 1	649 bp upstream
Gm10252	predicted gene 10252	233 bp downstream
Gm73429	predicted gene, 73429	within coordinates
Gm73431	predicted gene, 73431	476 bp upstream
Rr380754	regulatory region 380754	within coordinates
Rr646450	regulatory region 646450	159 bp distal
Rr646451	regulatory region 646451	424 bp distal
Rr646452	regulatory region 646452	within coordinates
Rr646453	regulatory region 646453	487 bp proximal
Rr646454	regulatory region 646454	920 bp proximal
Tssr66541	transcription start site region 66541	845 bp downstream
Tssr66542	transcription start site region 66542	531 bp upstream
Tssr72394	transcription start site region 72394	1974 bp upstream
Tssr72395	transcription start site region 72395	1108 bp upstream
Tssr72396	transcription start site region 72396	1076 bp upstream
Tssr72397	transcription start site region 72397	802 bp upstream
Tssr72398	transcription start site region 72398	652 bp upstream
Tssr72399	transcription start site region 72399	389 bp downstream
Tssr72400	transcription start site region 72400	427 bp downstream