rs49263737 SNP Detail

Summary

• ID
  rs49263737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:100597648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGCACAT GTGCACACTT
  AAAGAAACAA AAATTACCAG GTTTTGAAAT CAAGCTAATG ATAAATATAT AGAGACCCAG
  CTACTCAGAA CAAGACAAGG AGATGACTTG TATCCAGGAG TTTGAGAGCA ATCTGGGCAA
  TATAGGGAGA CCCCGACTCA TAAATCAAGT AAATTTGTTT TTAAAATATA TAGCAACAGG
  R
  ACAACATTCC CAGAATATGG CAGGGAGTTG TGGAAAGGAA CAGCCTAAAG CCAACCCATA
  ATTTTCCTTA TTTTAAATAC TTTATTCTAA CTTTTGAGCA AATGTCTATG ATAAAATTCA
  AAAGACACAA GCAAGTGTGA AGCAAAAATG GCAGCTTCCC TCCTATCATG CTCAGCTTCT
  CAGAAACAGT CTCCTTAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61949020	NES17114989	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49263737					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61949020	NES17114989	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100597648 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gtf2h2	general transcription factor II H, polypeptide 2			Intron
				Noncoding-Transcript-Variant