rs49264421 SNP Detail

Summary

• ID
  rs49264421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28685813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGGCCATC TACGGGCGCA AGGCGGATAA TCCGCTGCAT
  CCCACCCCGG GGAGCAGGCT CTGCCGCCCC GGACGCCCCC CAAGAGTCTG TTCCCCCAAA
  Y
  TCTGCGAAAA ACCGCGGCCA CATTGCGGCC CGCGAACCTA CCTGACGGAT CGCCGGCTTA
  GAAAGAGGGA CGGCTCTCGC GAGAACGGCT CATATCCGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52348213	NES15378171	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	T	C	T		C	T	T	C		C
ss323971721	CHEV_12_29320679	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49264421					SNP	T	C	C	C	C	C	C	T	C	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348213	NES15378171	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28685813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4510	CpG island 4510	within coordinates
Gm53713	predicted gene, 53713	255 bp upstream
Rps7	ribosomal protein S7	within coordinates
Rr255850	regulatory region 255850	1588 bp proximal
Rr265285	regulatory region 265285	within coordinates
Rr369505	regulatory region 369505	within coordinates
Tssr116014	transcription start site region 116014	574 bp upstream
Tssr116015	transcription start site region 116015	18 bp downstream
Tssr116016	transcription start site region 116016	29 bp downstream
Tssr116017	transcription start site region 116017	53 bp downstream
Tssr116018	transcription start site region 116018	77 bp downstream
Tssr116019	transcription start site region 116019	100 bp downstream