rs49264847 SNP Detail

Summary

• ID
  rs49264847
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106764393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGC GGGCCGAGAG TTTCGCTCGC
  Y
  GCCTATCACG GAGCTCCGTG GCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323187615	CHEV_9_106789525	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49264847					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106764393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22277	CpG island 22277	within coordinates
Manf	mesencephalic astrocyte-derived neurotrophic factor	1559 bp downstream
Rbm15b	RNA binding motif protein 15B	119 bp upstream
Rr401656	regulatory region 401656	within coordinates
Rr686406	regulatory region 686406	76 bp proximal
Rr686407	regulatory region 686407	224 bp proximal
Rr686408	regulatory region 686408	821 bp proximal
Tssr86941	transcription start site region 86941	757 bp downstream
Tssr91351	transcription start site region 91351	100 bp upstream
Tssr91352	transcription start site region 91352	82 bp upstream