rs49265061 SNP Detail

Summary

• ID
  rs49265061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23703773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTGTAA AGGATCACTG
  ATTATTGTTT GAACGTCAGT AGATTTTATA CATGAATTTG GTTCTAACAA GACAGAACAC
  GTGAGATATT TTTTGTACTT TCTTTCTGAA GTAAACTTGT CAAGAATTAA AATCTAATCC
  ACATGCTGAG ATCAAAATGT ATGTAAATAT ACTTCAAGTA TTTTGTTATG GACAATATTG
  Y
  GTCGTACTCG GCCCCATGGT GTAATGGTTA GCACTCTGGA CTTTGAATCC AGCGATCCGA
  GTTCAAATCT CGGTGGGACC TTCTTTCCTT TTGCCGTTCT ACCAGTTACT GGATCATCTT
  GCTTACATTT CTTCCAGTGG CTGGATCCTC CTTCTCAATT CTGGTCTCTG CTAAGTAAGT
  ATACGGGTGG TTAGAGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148805692	ENSMUSSNP6483904	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss324289669	CHEV_13_23611472	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49265061					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23703773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5357	CpG island 5357	1314 bp distal
Gm54514	predicted gene, 54514	1353 bp downstream
Gm61424	predicted gene, 61424	within coordinates
n-TMcat6	nuclear encoded tRNA methionine 6 (anticodon CAT)	1840 bp downstream
n-TQttg4	nuclear encoded tRNA glutamine 4 (anticodon TTG)	482 bp downstream
n-TQttg5	nuclear encoded tRNA glutamine 5 (anticodon TTG)	10 bp upstream
n-TStga1	nuclear encoded tRNA serine 1 (anticodon TGA)	1376 bp downstream
Rr281116	regulatory region 281116	within coordinates
Rr281117	regulatory region 281117	1827 bp proximal
Rr403642	regulatory region 403642	1772 bp downstream
Rr403643	regulatory region 403643	1240 bp downstream
Rr403644	regulatory region 403644	376 bp downstream
Rr403645	regulatory region 403645	within coordinates