rs49266223 SNP Detail

Summary

• ID
  rs49266223
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96140074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGGTAGAGAG AAGCAAGCAA GGAAGCAAGA AACCCTTTTC
  AGAGGGGGAT TCTTCCAGTG TAGGTGATGC GTATGTGATA AGAGACAGAC AGACACCTTA
  K
  TTATGTTGGA TTGTGGAACT CACTGGCAGC GGAAACATGA CATGCCAGTA AGTCCAGTGG
  AGACAGGGAT TTAATTTTGA CTTTTGAATG TTTTCACTAC T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136830307	ENSMUSSNP5833752	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49266223					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96140074 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1199 bp upstream
Tssr86589	transcription start site region 86589	676 bp upstream
Tssr86590	transcription start site region 86590	693 bp upstream
Tssr86591	transcription start site region 86591	707 bp upstream
Tssr86592	transcription start site region 86592	770 bp upstream
Tssr86593	transcription start site region 86593	785 bp upstream
Tssr86594	transcription start site region 86594	987 bp upstream
Tssr86595	transcription start site region 86595	1225 bp upstream
Tssr86596	transcription start site region 86596	1249 bp upstream