rs49266701 SNP Detail

Summary

• ID
  rs49266701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20453985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACCTGG GTTGTTTGCA
  AGAGCAGGAA ATGCTCTTAC TCACTAAGGC ATCTTTACAG CTGGAAAAAT ACATCTGTTT
  TTCTAACACA CTGAGGGGTA CTAGGAGGGC ATCCTTCACT GTTTGAACCT CAAGCAAGGA
  CGTTAGTGAT GGGTGGGGTG GGGGGCATAC TAATCCCAGG GCACGTCCCC AGGATGCAGG
  Y
  GGTCAAAGGT TGGATCCATA TAGCGCAGGA AAGAAAATGA TTGGGAGGGT GAGTTAAAAA
  GGGAGGGAAA GAGGAGGTGG GATGATGAGG GGAGTGAGAA GAAGGAAGGG AGAAAGTGCC
  CGAGCCAACA AGTGACTTTA GTTTGCTCTG AGCCTGGACC ACACCTCAGC TCAACCGACA
  GGATTTTTAA ACTAACTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61358667	NES16737671	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49266701					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61358667	NES16737671	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20453985 () rs orientation: forward

Symbol	Name	Function Class
7030419G21Rik	RIKEN cDNA 7030419G21 gene	681 bp downstream
Cpgi21390	CpG island 21390	1490 bp proximal
Rr199509	regulatory region 199509	216 bp proximal
Tssr83900	transcription start site region 83900	1919 bp upstream