rs49267057 SNP Detail

Summary

• ID
  rs49267057
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30737001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGCCAAT ACATCTTTTT
  TTTTTTTTTT TTTTTTTAAA GGTTGCAACT AAAAAGCTCC TGTTGTAACA GAAAAAAGAC
  ACAAAGGAAA CCCACAACTC CACTTCTCAG TACCAGCCCA GCAATGGAGA AACGGATGGC
  CAGTTGGCCA GTCGGCTCAA CTATTATACT AGGGTAAGGC ATGTTAGAAT GTTCCAACGT
  K
  GAGTTGATTG CTATGAAGTT AGCTTCACCA AGGACCCGAG AAGGTCGTTC TCAAAGAATC
  ACTGACTTTA ACCCAGAATC CTCCAAACAT CTACACACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC AGAGGGGGAG GGGGAGGGGA GGGAGAGGGG GAGAGGGAGA
  GAGAGAGAGA GAGAGAGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60989529	NES16136136	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49267057					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989529	NES16136136	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30737001 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	within coordinates
Gm71772	predicted gene, 71772	263 bp downstream
Rr644981	regulatory region 644981	577 bp distal
Rr644982	regulatory region 644982	281 bp distal
Tssr65831	transcription start site region 65831	568 bp downstream
Tssr65832	transcription start site region 65832	159 bp downstream
Tssr65833	transcription start site region 65833	229 bp upstream
Tssr65834	transcription start site region 65834	283 bp upstream
Tssr71891	transcription start site region 71891	1077 bp upstream
Tssr71892	transcription start site region 71892	482 bp upstream
Tssr71893	transcription start site region 71893	284 bp downstream
Tssr71894	transcription start site region 71894	305 bp downstream
Tssr71895	transcription start site region 71895	318 bp downstream
Tssr71896	transcription start site region 71896	348 bp downstream
Tssr71897	transcription start site region 71897	1483 bp downstream