rs49270439 SNP Detail

Summary

• ID
  rs49270439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94225348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCCTTTC CTCCCATTCC
  CCTGTAGCTC TTTGTTGCCA TACATGGAAA CCAGAGGAAC CAAAGCAATG ATGTCAGTTG
  TTTGGTGACC TGAGAAAGCT GGCTAGCTGG CTCCATTTTC TCCCCTAGCA CTGAAACATA
  GGAAACAAAA TGATTGTTTC CTCTGATTTG TCACATTTTA AATATGTTGC AAAATTTAAA
  Y
  ATGAAAATTT CAAGGTCATT GAAGCCTGAA TTATCTTGTA GATAATTATC CTGTAGAGGC
  CTAACTGAGG GCAAATCTGC CATGTAACTG AATGACTTAA TAGTTTACTT AAGAGCATAG
  TAGCTAGGGC TGGAGAGATG GCTCAGTGGT TAAGAGCACT GACTGCTCTT CCAGAGGTCC
  TGAGTTCAAT TCCCAGTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
ss60515593	NES16523066	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
rs49270439					SNP	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60515593	NES16523066	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94225348 () rs orientation: forward

Symbol	Name	Function Class
Tssr139547	transcription start site region 139547	594 bp upstream
Tssr139548	transcription start site region 139548	1695 bp upstream
Ttc3	tetratricopeptide repeat domain 3	within coordinates