rs49271650 SNP Detail

Summary

• ID
  rs49271650
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100824666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGACAGG AGCCCACGTG
  GTTAGAGGTT TGATGAACAG CATTGTCCAG AGGATCTGAG TTCAGTTCCC AGCACCTACT
  GGGTGGCTTA CAAGCACTTG TAACTCCAGC TCCATAGGAT CTGATGCCCC TGCCCTTGTA
  GGGCATCTGT ACTCGTGTGC ACATACCCAC ATAATTTTTA AAAAAAAAAA AATTTTTTTT
  W
  AAGTGAAGGG GCATTGTAAT GGCAGAAGGC AGCATCAGGG GAGAAGCAGT TGGTAGTTGG
  TTATGCACAC TTTTAATCCC AGCAGTGAGG CAGGCAGATA CCTGTGAGGT CAAGGTCAGC
  CTACATATCA AGTTGCAGGC CAGCCAGGGC TACATAGTAA AAGAAAGAGG AAGAAAATTG
  AGATGCATAG TGTTCTAGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135542920	ENSMUSSNP1299307	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49271650					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100824666 () rs orientation: forward

Symbol	Name	Function Class
Rr581925	regulatory region 581925	133 bp distal
Rr581926	regulatory region 581926	392 bp distal