rs49271809 SNP Detail

Summary

• ID
  rs49271809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81114205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCTGCC CAATCCAGCT
  GAGGCACTAT TGATAATTGG TGGCTTCTGG AGGAGGATGA ATCTGTTTTC TTGGAGGATA
  TGGTCCTGGG TAGGTCAACC ATGCTCCACA TGCATGGACA TATGGGAGCA TGAACTGAAC
  TCTGAGTTAT AAACCAAGAA AGGAGAAATG ATGTTCTAAA GTTGGGAAGG GTGGTGGATC
  R
  GGGAGGAGTT AGGGATAGAA GTTGGGGAAG AATATGATGA AAATACGTTG TATGTATTTA
  TGAAATTCTC AAAGAACCAA TACAGATATC ATATTAAAAG CCCGTGCTTA GTAAGTTCCT
  GTGCTTAAGT ACTGTGACAG TGCCAAATTG TACTCTAAAG TTTCTGTAGT TAGTTTACCT
  ATGATTGATT GAAGAGTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146076321	ENSMUSSNP4280052	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49271809					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81114205 () rs orientation: forward

Symbol	Name	Function Class
Gm33596	predicted gene, 33596	455 bp downstream
Rr393005	regulatory region 393005	1466 bp downstream
Rr393006	regulatory region 393006	800 bp upstream
Rr531544	regulatory region 531544	1308 bp proximal