rs49272240 SNP Detail

Summary

• ID
  rs49272240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152336091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTAATGGA CAAAGAGGAT CAAACTATGA
  GCACTGAAGC CATCCAAGGC CACAGCTCCT CTAAAAATGA AAGAGGGACA CCCCTCAGTG
  CTACAGGGTC TAAGTGTTCC CTAGAGGCAA AGAGAAACCC CTGCATGTTt gtcaattcca
  Y
  acagttattg ggaagaggaa acacagctga gaaaatatct ccatcaagtt tcctgtagga
  aagtccggag gccattttct tgattaatta tttatgtgag aggtcccaat gtgtggaggg
  ggctgtcacc ctggacagtg gtcctgagtt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145731282	ENSMUSSNP1049965	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320065946	CHEV_1_154307470	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49272240					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152336091 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420464	regulatory region 420464			1012 bp distal
Rr420465	regulatory region 420465			1439 bp proximal