rs49272608 SNP Detail

Summary

• ID
  rs49272608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22436856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGAGGCT GGCTGAAGCA
  GATCAGGTCT AACACTTCCA GGATCCTGTG GAAGTGATGG CTCAGCCGCA GAGCAGCACA
  TAGTACAAAC GTTAGAGAGT TTACAGAGAA GCGAAGAGAA TTTTAACTGC TGTGAGAAAA
  CGGTCAGAGG ATGCTAAGCT TCCTGTTGCA TCAGGACCGA TCTGAATGAC TGATGTAACT
  Y
  ACTCATGCGT TTGCATTGCT AGCAACATCC CCACTTTCCC CCTACGTAGC TTGGGTTCAC
  AGACAAGTGA AGGTGCAGAG ATGGAGTAGG CAACCTCTAC CTTCTTATAA CCCAAAGAGT
  GGTCCCTGGA CTGACAGCAT CATCTGCAAG CTTGTGAAGA ATGCACAGGT TGCCTGCTGG
  GTCAGAATCT GCATTTGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63684845	NES17069301	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49272608					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63684845	NES17069301	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22436856 () rs orientation: forward

Symbol	Name	Function Class
Dgkg	diacylglycerol kinase, gamma	within coordinates
Tssr4816	transcription start site region 4816	74 bp upstream