rs49272643 SNP Detail

Summary

• ID
  rs49272643
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22533719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAGTGAT TTTATGACTG
  AATATTCCAC TAATTGTAAA ATACATTTTT AAAGAATCAC GATAAATCCC AGGTCACAGG
  ATCTGAAACT TCCGGTCAGT GGTAAGAAAC CAATGACAGA ACTGTGAGAG CGGCGTCCTT
  AAGAGCAGCT GCGTAAAACA CCCCGCTGCT CCGCTCCCTC CCGTTTCCCA GCCCCGCAGC
  G
  CCTCTAACCT GGGACCTTTC GGGGCCGCCG GGCTGCTGTG CCGACAGTTG CGCTGCCGAC
  TGCCGCCTCT CCCAGGCCCT CTGCCACGGA AATGCTTCTG AGGAGACTTT TCCGGGTCCA
  GAAACAGCTA GGACGCAGAA ACCGAAAGGT AGAAAGTTGA TTGGTGGAAG TCCCTGTCAT
  TCCGGCCTGG ATCTTAGGAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145304094	ENSMUSSNP6293038	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49272643					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22533719 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	within coordinates
Gm53992	predicted gene, 53992	184 bp upstream
Rr392409	regulatory region 392409	1925 bp downstream
Rr523017	regulatory region 523017	within coordinates
Rr523018	regulatory region 523018	89 bp proximal
Tssr146602	transcription start site region 146602	56 bp downstream
Tssr146603	transcription start site region 146603	76 bp downstream