rs49273620 SNP Detail

Summary

• ID
  rs49273620
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8764128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAATAAAT GGTGAGAAAA
  GGAAAATAGA CTTTATAGGG ATCTTTAAGG TGGAGACATG CAGTCTGCTC TCTGCATAAA
  AGCCTACAGA GTGAGTTATG CAAGCAGGAG TGGGGTTGGG TCTAAGAAGA ACCCATCCAG
  ACACCAATCA GGACTCTATG TCTTTTTGAC TCAGATGACC TGAGGGCCTT TCCATGCTAC
  M
  GTTTCCCTAT CCAAGAGGAA GTAAAGTCAA GCTAATTGCT ACCCGGCTGG CCCTTCAGAG
  GCCAGGATGC TTCCAGGTCA CCTAAAGCTA GCAAGGCCTT GCTGTAACAC ATGAGCTACA
  TCTGAACCTT AGCTAGCATT TGGCGCTTAT AGCAGGCTGC CCTTTAATCT GCTTCACAGT
  GAGCTCCCTT TCCTGGCAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146767841	ENSMUSSNP2038296	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss323245685	CHEV_10_8608182	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49273620					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8764128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1286	CpG island 1286	1618 bp distal
Gm26674	predicted gene, 26674	1506 bp downstream
Rr427412	regulatory region 427412	1824 bp distal
Tssr96663	transcription start site region 96663	1841 bp upstream
Tssr96664	transcription start site region 96664	1772 bp upstream