rs49274507 SNP Detail

Summary

• ID
  rs49274507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117012502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAAGTCCT TGCATTGGCA AGTGGTGTAC AGGTGGCCAA
  GACGGCCATA ACCACGCCTA AGGATACGTT TTCATCACCC TAGTTACCTC CAGAAAAAGC
  Y
  AGACCCCCCC TAACACAGGA AGAACCCCAG TAAGGAACAC ACCAAGCTTG CAGCTCTCCC
  ACTCCTAGGC TCCAGTAGAC CCTAAGCTTG GAGATTAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147285235	ENSMUSSNP3930918	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49274507					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117012502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	52 bp proximal
Gm22980	predicted gene, 22980	1143 bp upstream
Gm26330	predicted gene, 26330	16 bp upstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	793 bp downstream
Rr398411	regulatory region 398411	614 bp upstream
Rr598068	regulatory region 598068	1976 bp distal
Rr598069	regulatory region 598069	928 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	731 bp upstream
Snord55	small nucleolar RNA, C/D box 55	466 bp downstream
Tssr38607	transcription start site region 38607	1467 bp downstream
Tssr42956	transcription start site region 42956	539 bp downstream
Tssr42957	transcription start site region 42957	770 bp downstream
Tssr42958	transcription start site region 42958	817 bp downstream
Tssr42959	transcription start site region 42959	839 bp downstream
Tssr42960	transcription start site region 42960	880 bp downstream
Tssr42961	transcription start site region 42961	894 bp downstream