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rs49274626 SNP Detail
Summary
  • ID
    rs49274626
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:70057710 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ACTGCTGCAC AGGGAAGCCA AGACTTCACA CTGGTAACTG
    GGCCAGGGTT GCCAGGGAGA CCAGTGGGGC AGGGAACGTG CAAGACGCTT CACAGAGAGG
    R
    AGGACGTTGG GCTTGGATGA CCTAAGTGGA AAGAGATACA AGAGGAGAGT GTGGGATTTA
    ATTTCCCTTG ATTGGATTAT GGGTGCCTCG ATTCCAAGG                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
DBA/2J
LG/J
SM/J
ss132366919 ENSMUSSNP6654608 ENSEMBL ENSEMBL_Sanger f SNP A
ss323733885 CHEV_11_69980386 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
DBA/2J
LG/J
SM/J
rs49274626 SNP A G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:70057710 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Clec10a C-type lectin domain family 10, member A within coordinates
Rr251315 regulatory region 251315 within coordinates
Tssr102659 transcription start site region 102659 221 bp downstream
Tssr102660 transcription start site region 102660 177 bp downstream
Tssr102661 transcription start site region 102661 100 bp downstream
Tssr102662 transcription start site region 102662 300 bp upstream
Tssr102663 transcription start site region 102663 318 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory