rs49275389 SNP Detail

Summary

• ID
  rs49275389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:41519731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGTATC CAGTGAACTT
  TAAAATCAAT GATTTCCAAG CCCTTGCCAG TCTGTACACC AAACAGGGTT AGTGTGTAAA
  CCCCTCCCAT TGCTGTCTAC CAAAGAAGGA TTCCACCTTG CCATTCCCCG TGGGATACTG
  TAAATGGCAT TTCCTCTGCT TAAGACTCTT TCTCTTCCAG ACACCTACTT AAGCGTCTTT
  Y
  AGTGTTGAGA TCAAGTCTGT TCCCATGGGA AGACTTAGGG ACAGTTTTTC CATTTTGACA
  GTCCCCAGAC AAGACAAATA TCTCTTTCTA CTGAAGCCCC CCAGCTCTTG AATGTATCTC
  AGTTACAAGG ATGCTTATCA CTGGGATTGG GTAAACTTTT TTTTTTTAAG ATTTATTTAT
  TATTATATCT AAGTACACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52248957	NES15256799	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49275389					SNP	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52248957	NES15256799	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:41519731 () rs orientation: forward

Symbol	Name	Function Class
Ccdc162	coiled-coil domain containing 162	within coordinates
Rr222673	regulatory region 222673	758 bp proximal