rs49278335 SNP Detail

Summary

• ID
  rs49278335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127290771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCACTTT ATGAAACAGC
  AGTGACCTTT CAGGCAAATT TTTCCAAGTA ACTATTTTCA TCCCTAGTAT ATCTAAGGTC
  AGTAAAAGTG TTCTAAATAT AGAATAAGGC TTCACAGAAA TATTTGTGTG TGCTTATATT
  GTATTTAAAT TAGTATACTT AACATTTTAC TTCCTAAATA TTTGCATCTA AGTGTTACAC
  R
  CACATAATAA CAAAATTAGC CAATACAGTT ATAAAAATGA TTTTTGCTTA GCATGCGATT
  TCTCTTACAT GACAAACAGT AGCATCATAT TCATTCTTAC ATGCATAACT ACTTCTAACC
  CAGATTTAAT ACCTGTTCTC ACAATTCCAA AGGGAAAAAA ATAACTTGAA GTGCAATTTA
  AAATACTATC ATAAAACTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135865065	ENSMUSSNP6295914	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320954677	CHEV_3_127200040	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49278335					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127290771 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	1210 bp proximal
Rr584800	regulatory region 584800	1869 bp proximal
Tssr35576	transcription start site region 35576	1864 bp downstream
Tssr35577	transcription start site region 35577	1927 bp downstream
Tssr35578	transcription start site region 35578	1954 bp downstream
Tssr35579	transcription start site region 35579	1973 bp downstream