rs49279202 SNP Detail

Summary

• ID
  rs49279202
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88193001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACAAAA GTCTCTGCTG
  AGGTCTTCTT CCTCAAAGCA GCTGCTGACT ACACATAAGC ATCATGTCCA ACAGACAAAC
  ACGCAATCAG CACTCAGGAC ACTCAGGGCC AGCCTGATGC TCCTGAGGTA TCGTGAAACT
  TGGCCTGGTG AGCACAAGCT ACCGGGTATG ACAACTTGCA CCTCTTTGTT GGCAGCCAAG
  A
  GTCTCTCACA AGTGTACTAG CAGTCTGTGC AGTTGAATCC TGCAGGACTC TTCTGTGACA
  GCCAGGAGAG ATTGACCGTT TCTGGGAACT CTGTTGTGGG GAGTCTGGAT TTAGTCTCTT
  CAAGTGCTCT GATTGACAGG GAAGAGCTGC AGCAGCTTTC ATTGGCGATA CTCTGCCACA
  CGAAGTCACC TTCGCCCGCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144899391	ENSMUSSNP529626	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs49279202					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88193001 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr18063	regulatory region 18063	1200 bp proximal
Rr28029	regulatory region 28029	1745 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	414 bp upstream