rs49280785 SNP Detail

Summary

• ID
  rs49280785
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45173574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG GCTTTCAGGA CTACCAGCCC
  W
  GGTTGTTTCT CTTCTCAAAG TGGTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss61388327	NES16765002	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	A
ss136408153	ENSMUSSNP951285	ENSEMBL	ENSEMBL_Sanger	f	SNP						T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs49280785					SNP	T	T	T	T	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388327	NES16765002	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45173574 () rs orientation: forward

Symbol	Name	Function Class
Gm20612	predicted gene 20612	986 bp downstream
Il10ra	interleukin 10 receptor, alpha	within coordinates
Rr677873	regulatory region 677873	477 bp distal
Tssr89253	transcription start site region 89253	613 bp downstream
Tssr89254	transcription start site region 89254	680 bp downstream
Tssr89255	transcription start site region 89255	770 bp downstream
Tssr89256	transcription start site region 89256	794 bp downstream
Tssr89257	transcription start site region 89257	1900 bp downstream
Tssr89258	transcription start site region 89258	1941 bp downstream
Tssr89259	transcription start site region 89259	1964 bp downstream