rs49280814 SNP Detail

Summary

• ID
  rs49280814
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:47987371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAATCCCTT GTGTGGCTTA GCGCTTGTGT GTCGAGTTAT
  TCTGTCTTCA AATCTGAACG CCTTTAAATT TGAAAACTTG TGGTCTCGTG GAAAGGGTCG
  W
  TCGAGTAAGT AAAATCTCTA CAGAAAAATG AATGACCCTG GTGTTTCGGT TTCTGTCCAT
  AATGCTCAGT GAAGTCACTC CTCAGTCTGT TGTTGAGGGA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60607567	NES16308474	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49280814					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60607567	NES16308474	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:47987371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20329	CpG island 20329	82 bp distal
Gm63731	predicted gene, 63731	1165 bp downstream
Rr186609	regulatory region 186609	within coordinates
Rr368533	regulatory region 368533	533 bp downstream
Rr400846	regulatory region 400846	645 bp downstream
Rwdd4a	RWD domain containing 4A	within coordinates
Trappc11	trafficking protein particle complex 11	866 bp upstream
Tssr77336	transcription start site region 77336	627 bp downstream
Tssr81236	transcription start site region 81236	924 bp upstream
Tssr81237	transcription start site region 81237	900 bp upstream
Tssr81238	transcription start site region 81238	859 bp upstream