rs49282695 SNP Detail

Summary

• ID
  rs49282695
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48040969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA CACCCTAGGC TTGAGGGCAC
  R
  AAGTGCTCCA CTCACTAGCC TGTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145708996	ENSMUSSNP5866176	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss325406551	CHEV_17_47866993	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49282695					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48040969 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	Intron
Rr528106	regulatory region 528106	665 bp proximal
Tssr5147	transcription start site region 5147	1293 bp downstream
Tssr5148	transcription start site region 5148	731 bp upstream
Tssr5149	transcription start site region 5149	1439 bp upstream
Tssr145004	transcription start site region 145004	1302 bp downstream
Tssr145005	transcription start site region 145005	1281 bp downstream
Tssr145006	transcription start site region 145006	1252 bp downstream
Tssr145007	transcription start site region 145007	1220 bp downstream
Tssr145008	transcription start site region 145008	1199 bp downstream
Tssr145009	transcription start site region 145009	1171 bp downstream
Tssr145010	transcription start site region 145010	789 bp downstream
Tssr145011	transcription start site region 145011	770 bp downstream
Tssr145012	transcription start site region 145012	753 bp downstream
Tssr145013	transcription start site region 145013	701 bp downstream
Tssr145014	transcription start site region 145014	36 bp upstream
Tssr145015	transcription start site region 145015	98 bp upstream
Tssr145016	transcription start site region 145016	109 bp upstream
Tssr145017	transcription start site region 145017	554 bp upstream
Tssr145018	transcription start site region 145018	566 bp upstream
Tssr145019	transcription start site region 145019	597 bp upstream
Tssr145020	transcription start site region 145020	618 bp upstream
Tssr145021	transcription start site region 145021	644 bp upstream
Tssr145022	transcription start site region 145022	676 bp upstream
Tssr145023	transcription start site region 145023	703 bp upstream
Tssr145024	transcription start site region 145024	814 bp upstream
Tssr145025	transcription start site region 145025	1158 bp upstream
Tssr145026	transcription start site region 145026	1414 bp upstream
Tssr148459	transcription start site region 148459	1243 bp upstream
Tssr148460	transcription start site region 148460	1191 bp upstream
Tssr148461	transcription start site region 148461	1179 bp upstream
Tssr148462	transcription start site region 148462	1136 bp upstream
Tssr148463	transcription start site region 148463	763 bp upstream
Tssr148464	transcription start site region 148464	678 bp upstream
Tssr148465	transcription start site region 148465	77 bp downstream
Tssr148466	transcription start site region 148466	90 bp downstream
Tssr148467	transcription start site region 148467	585 bp downstream
Tssr148468	transcription start site region 148468	616 bp downstream
Tssr148469	transcription start site region 148469	706 bp downstream