rs49282699 SNP Detail

Summary

• ID
  rs49282699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88185919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGAGACA GGGACCATCC
  CAGGGACTCC TAAAGAGGTC TTATAAAAGG CTTCTCTGTG AGGACGCATG CTATGGCTCC
  CCTTTGCTCT AGTCGCTGTC TACAGCTAGT GTCTGCCTAT CTCCTTTTCC TTCTAGTACC
  TTACAGGCCA CTTTGAGATA CCTGGACTGG GTTCCATCTA AAATTGGCCT TAAGCCCCTT
  Y
  TCACGGCTTC CTGTGGCTAG CTGCTAGGGC TGTTGAGAGG GCTCGGCTTG GTCTGTCACA
  TCTCTGTAAG GTCCCAGATC CCAAGAGTGG GAAGAATAGG GTGGATGAAG GTAGAGTAGG
  AAGCCTGTCC ATCCCAACTG AGCTCCTGGC TTCATCTCTG GTTGCCATAA AGGCAAAGGT
  GTTGGCTGTA GGGGCATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	C57BL/6J	FVB/NJ	SPRET/EiJ	ZALENDE/EiJ
ss350399118	MGP_WTSI_1_90154772	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	C57BL/6J	FVB/NJ	SPRET/EiJ	ZALENDE/EiJ
rs49282699					SNP	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399118	MGP_WTSI_1_90154772	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88185919 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	682 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	913 bp upstream
Tssr7959	transcription start site region 7959	935 bp upstream
Tssr7960	transcription start site region 7960	950 bp upstream
Tssr7961	transcription start site region 7961	997 bp upstream
Tssr7962	transcription start site region 7962	1151 bp upstream
Tssr7963	transcription start site region 7963	1179 bp upstream
Tssr7964	transcription start site region 7964	1194 bp upstream
Tssr7965	transcription start site region 7965	1230 bp upstream