rs49284195 SNP Detail

Summary

• ID
  rs49284195
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:46962995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGAGGGAGAG ACCCTAAGCC ATGCAGCTTG TATCACCATC
  TACTACTGAA GTTCATCTCT CTCCTATCTT TGCCCTTCCT CCCCCTCCTC TCTGTGGCTG
  W
  GAAATGCACT TCAAAAATGT TGAAAAAATA TAGATTAACA GTTTTCTGGG CACAAATTTA
  GTATGCTATT TGTCTTGCAT TTCCAGTACT GAATTCCCAG T                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149066331	ENSMUSSNP2078260	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49284195					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:46962995 () rs orientation: forward

Symbol	Name	Function Class
Rr371227	regulatory region 371227	1187 bp downstream
Rr410622	regulatory region 410622	1799 bp distal
Rr410623	regulatory region 410623	1341 bp proximal
Tssr11557	transcription start site region 11557	1921 bp downstream
Tssr11558	transcription start site region 11558	1950 bp downstream