rs49288148 SNP Detail

Summary

• ID
  rs49288148
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45111477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGGCCT CAGCCCATCT
  TCTTCCAGAT GGTGAGCGAG GCGGTGAGGA CTCCAGCCAC AAAGATGGTC ACTGTCTGCC
  ATGTGGGGGT CCCGAAGTAG GAGAGGAGGC CTTCCTGAGA ACAGAGAGAT GGGTGTGACT
  TCAATACCAA ATTGCAGGGG GAAGAAAGAG ATTTCCCATG AAGGGATGCT AAGGCGCTCC
  Y
  GGGCTTATAA CCCCAGCACT CAGGAACCCT AGGAAGGAGG GCTGTAAGCC TAATGCCAAC
  CTGTGAAGTT TATTGAGATC CTCACTCAGA AAACAAAACT TAGGGCCAGC AAGATAGCTC
  ATGCACAAAA GGACACACAC GCGCGCGCGC GTGCGCGCAA ATGTAAAAAG TATCCCACTC
  AACCCACGAT CCCAAAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
ss61003427	NES16114151	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	T	C	C
ss149135516	ENSMUSSNP4471619	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
rs49288148					SNP	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003427	NES16114151	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45111477 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	Intron
Cpgi19061	CpG island 19061	1919 bp distal
Gm10252	predicted gene 10252	1753 bp downstream
Gm73429	predicted gene, 73429	590 bp upstream
Gm73431	predicted gene, 73431	403 bp downstream
Rr380754	regulatory region 380754	621 bp downstream
Rr646450	regulatory region 646450	1679 bp distal
Rr646451	regulatory region 646451	1944 bp distal
Rr646452	regulatory region 646452	1034 bp distal
Rr646453	regulatory region 646453	601 bp distal
Rr646454	regulatory region 646454	104 bp distal
Rr646455	regulatory region 646455	986 bp proximal
Tssr66542	transcription start site region 66542	953 bp downstream
Tssr72399	transcription start site region 72399	1107 bp upstream
Tssr72400	transcription start site region 72400	1076 bp upstream