rs49288672 SNP Detail

Summary

• ID
  rs49288672
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:120756779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTCTGAA ACTTCCTTCT
  TTCTAAGTGA TGGTAAATTC CTGTGTAAGG GAGTGACTTA ACTTTTACAA TCTTGCTGAA
  TTCTAAACCC TTGATCTTGG TCAAGGACGC CCTTGTACTG TTGGAACACT GGCAGAAGGC
  TTTAGCCATG TCAGAGCACT TATAATAGGA AAATACTGAA AGAGAGCACG TGGATCCATA
  M
  TCTAGACTAG CGCGGTAATG GAACTTGGGA ATGAAAAATT AATGTATGGG TAGAGAACAC
  TAGACTCCAG GAGGAGAGTT TCCTTAAAAC TCTTTTGCCT CACGAGTGAC TTTTAAGCCT
  TTCGGCTTGT CCAGTTGACT CAACTGGAGA GCGTAGCACA TGGGAAATGT AAATGAGGAA
  AATACCTAAT AAAAAAGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134396207	ENSMUSSNP5123788	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49288672					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:120756779 () rs orientation: forward

Symbol	Name	Function Class
Rr395603	regulatory region 395603	within coordinates