rs49289519 SNP Detail

Summary

• ID
  rs49289519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77919772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCATCTC GCCAGCCCAA
  TGGGAAGCCT ATTTAAATGG CATTTAGTGT GACCAAAAAA AAAAAAACAT GTCTCCTTTA
  TCTGGATATG GATTAATTTG GAGCAATAGA TGGATCTTTG TAGACATGGA AAGCCAAGTT
  CACAGTGAAG TAACTTGGCC AAGGCGACAA GGGCCAACTG AACTACCACT GGTTCACAAC
  R
  CGTGATCCAC TACACAGTTT CGGAAAAATC TCTACCGAAT ACTACACAAG ATCTGCAGCC
  TTGGTTGTCT GAAACAGAAT TGATGCCTTT AGGTAACATG TTCTAATTCT TTGTGTTCAA
  TTGTAAATAC CAATTATGCT TGATACAACA GAGCCATTTT TGGTTTTTTC TTTTTTGATT
  CTTTGTGAAT TTCACATCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61428477	NES16804981	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49289519					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61428477	NES16804981	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77919772 () rs orientation: forward

Symbol	Name	Function Class
Gm23609	predicted gene, 23609	1482 bp downstream
Gm69108	predicted gene, 69108	within coordinates
Rr683456	regulatory region 683456	1365 bp distal
Rr683457	regulatory region 683457	1546 bp proximal