rs49289988 SNP Detail

Summary

• ID
  rs49289988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30115793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC TTTACCCACT GAACCATCTC
  R
  CCAGCCCCAA GCCTCCTTCC TAACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148677343	ENSMUSSNP1016026	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss322134081	CHEV_7_31201387	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49289988					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30115793 () rs orientation: forward

Symbol	Name	Function Class
Hcst	hematopoietic cell signal transducer	1344 bp downstream
Rr155980	regulatory region 155980	1193 bp distal
Rr167464	regulatory region 167464	1592 bp distal
Rr167465	regulatory region 167465	1192 bp distal
Rr167466	regulatory region 167466	1607 bp proximal
Tssr65704	transcription start site region 65704	1997 bp downstream
Tssr65705	transcription start site region 65705	1782 bp downstream
Tssr65706	transcription start site region 65706	834 bp downstream
Tssr65707	transcription start site region 65707	627 bp downstream
Tssr65708	transcription start site region 65708	966 bp upstream
Tssr65709	transcription start site region 65709	1021 bp upstream
Tssr65710	transcription start site region 65710	1790 bp upstream
Tssr71738	transcription start site region 71738	1015 bp downstream
Tssr71739	transcription start site region 71739	1095 bp downstream
Tssr71740	transcription start site region 71740	1202 bp downstream
Tyrobp	TYRO protein tyrosine kinase binding protein	within coordinates