rs49291193 SNP Detail

Summary

• ID
  rs49291193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91987055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTGCTCA ATGTATTTAA
  CTTTTCTGTA TCAATCAAGA GGCAGAGAAA CTCGTCCTTT CACCTCAACT TTGGTGAAAT
  TCTTTTTCTC AACAGCAGCC AATATTGTTT CCCTCAGGAA AAAGACCTGG TCAAGTTGGA
  CAAGTTTTGA GAAAGAGAAA AACAGCCAAA GGCTAGAGAC AGTAAGTAGT TAGTGAGATC
  Y
  GAAACCCTTT CTACTCTGGA GTCAAAACTT GGAGACTCTT CTCAGGCTTA GAGTCACACT
  TCTGCCCACT GGCTCTAAAA GAAAGAGAGA AAATTAATAC ATTAAAGTAC TTGGTAGAGG
  ACTGAACTGG GGAAAGCTGG GATGGTTATA ATAATGAATG GTGTATTCCT TTTCTACTGG
  AGATGTTTTA AAATATATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60764381	NES16407870	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49291193					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60764381	NES16407870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91987055 () rs orientation: forward

Symbol	Name	Function Class
Hdac4	histone deacetylase 4	within coordinates
Rr18400	regulatory region 18400	1346 bp proximal
Rr23700	regulatory region 23700	within coordinates
Rr35319	regulatory region 35319	747 bp proximal
Rr366965	regulatory region 366965	394 bp downstream
Tssr8116	transcription start site region 8116	385 bp downstream
Tssr8117	transcription start site region 8117	356 bp downstream