rs49291575 SNP Detail

Summary

• ID
  rs49291575
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89362238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGC TGGAAGCGCT CTCAGTTGGG
  K
  GTGCACATCA GAATCCCCAC TGGGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145481185	ENSMUSSNP6185551	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss322766255	CHEV_8_91159509	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49291575					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89362238 () rs orientation: forward

Symbol	Name	Function Class
Rr187078	regulatory region 187078	within coordinates
Rr382438	regulatory region 382438	within coordinates
Snx20	sorting nexin 20	within coordinates
Tssr82357	transcription start site region 82357	366 bp downstream
Tssr82358	transcription start site region 82358	449 bp downstream
Tssr82359	transcription start site region 82359	507 bp downstream
Tssr82360	transcription start site region 82360	542 bp downstream