rs49293629 SNP Detail

Summary

• ID
  rs49293629
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40125133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGTCCTG GGCTTCCCCA
  AGCCATTCTC ATTCCCAGCT CACCCTCAAA TCCTACTGTT TTGACAGCGA GAATGGAGCG
  ATCACGTGAC CACGTCCGAC TTTTTGACAG TGAGACCGGG GAGATCACGT GATCACGTCC
  CTCCTCCCAT ACCCCAGGAT AGCAGCGCCA GCCTCTAGGG ACAGCAGAAG CGGCAGAAGC
  S
  GGTGCTTTTT CAAGGAACTT CCGACTACTC TGTTTATCAG GTCTTCCAAC TTGGCCTTTA
  CCATATCTGC CTACGACACG CATTGCTTGG CCCACGCAGA TTTTTTTTTT TTTTTTTTCA
  GATTCAGTAG ATGTGGGTGT GTGCCCAAGG ACTCGATCAC ACGCTGGAAC TGCTTGTATG
  GGAAGAGCCC TTTTGGAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60723885	NES16366447	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49293629					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60723885	NES16366447	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40125133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi194	CpG island 194	within coordinates
Gm16894	predicted gene, 16894	122 bp upstream
Il1r2	interleukin 1 receptor, type II	within coordinates
Rr26842	regulatory region 26842	1434 bp proximal
Rr29353	regulatory region 29353	within coordinates
Rr396010	regulatory region 396010	within coordinates
Tssr62	transcription start site region 62	1256 bp downstream
Tssr6411	transcription start site region 6411	1224 bp downstream
Tssr6412	transcription start site region 6412	1203 bp downstream
Tssr6413	transcription start site region 6413	1189 bp downstream
Tssr6414	transcription start site region 6414	745 bp downstream
Tssr6415	transcription start site region 6415	118 bp upstream
Tssr11414	transcription start site region 11414	111 bp upstream