rs49294157 SNP Detail

Summary

• ID
  rs49294157
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:5299675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCA GGACACTGGC TCAGGTAGAC
  Y
  TTGTGGAAAA TCCAGGTCCC TGTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148482008	ENSMUSSNP31509	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss319613584	CHEV_1_5219533	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49294157					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:5299675 () rs orientation: forward

Symbol	Name	Function Class
Rr22269	regulatory region 22269	1926 bp proximal
Rr370760	regulatory region 370760	964 bp downstream