rs49295103 SNP Detail

Summary

• ID
  rs49295103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64607192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT TCCTCTCTCT TTCACTTCCT
  R
  GTTTCTACAA GCAGCTCCTC CCATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149175744	ENSMUSSNP1042403	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324382284	CHEV_13_64560686	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49295103					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64607192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5782	CpG island 5782	1506 bp distal
Cpgi5783	CpG island 5783	357 bp distal
Gm7712	predicted gene 7712	590 bp upstream
Gm31218	predicted gene, 31218	within coordinates
Gm59386	predicted gene, 59386	1950 bp upstream
Rr481886	regulatory region 481886	1961 bp distal
Rr481887	regulatory region 481887	1460 bp distal
Rr481888	regulatory region 481888	553 bp distal
Rr481889	regulatory region 481889	1506 bp proximal