rs49295153 SNP Detail

Summary

• ID
  rs49295153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17692309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA GGCCTGAAGG TGGCACTGGT
  Y
  CAAGTCCTGG AGTCTAAAGC CTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133020654	ENSMUSSNP6278811	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321756048	CHEV_6_17642310	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49295153					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17692309 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1365 bp proximal
Gm55211	predicted gene, 55211	1116 bp upstream
Gm55212	predicted gene, 55212	1627 bp upstream
Rr626833	regulatory region 626833	within coordinates
Rr626834	regulatory region 626834	1267 bp proximal
St7	suppression of tumorigenicity 7	1270 bp upstream
Tssr55085	transcription start site region 55085	1297 bp upstream
Tssr55086	transcription start site region 55086	1595 bp upstream
Tssr55087	transcription start site region 55087	1655 bp upstream
Tssr55088	transcription start site region 55088	1695 bp upstream
Tssr55089	transcription start site region 55089	1741 bp upstream
Tssr55090	transcription start site region 55090	1860 bp upstream